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A list of all the posts and pages found on the site. For you robots out there, there is an XML version available for digesting as well.
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Posts
Working With Your Biomedical KG
Published:
As a data scientist, a student needing to perform data science tasks, you may be interested to work on Knowledge Graphs (KG). The past decades, the biomedical research community has been working on the development of Knowledge Graphs to represent complex biomedical data. In this post, we will discover how you could start working with Knowledge Graphs and Biomedical KG using Neo4J.
contact
openings
Master 2 - Project BRIDGE
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Project for a master 2 or last semester of engineering school internship (PFE) in a software infrastructure that can automatically convert these prototypes into stable, documented, and FAIR-compliant web APIs, compatible with international standards like SmartAPI. #API #DevOps #FAIR Metadata #NLP #Reproductibility #Open Science
Master 2 - Project MEDiQ
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MedIQ focuses on the responsible AI development for healthcare, with a strong emphasis on safety, monitoring, and uncertainty estimation. The goal of this internship is to explore novel approaches to detect when AI systems may fail, behave unpredictably, or produce unreliable predictions—essential for clinical deployment. The project contributes to a broader infrastructure aimed at making AI models trustworthy, auditable, and compliant with medical standards. #explainability #HealthcareAI #ReinforcementLearning #DeepLearning #ML #rarediseases #KG
portfolio
The Biomedical data Translator
The Biomedical data Translator project (NIH/NCATS) seeks to revolutionize disease biology understanding by developing a robust ML framework.
MEDiQ
Reinforcement learning for reasonning.
PROFILE
A RAG for profiling automatedly data sources according to FAIR principles.
publications
Paper Title Number 1
Published in Journal 1, 2009
This paper is about the number 1. The number 2 is left for future work.
Recommended citation: Your Name, You. (2009). "Paper Title Number 1." Journal 1. 1(1).
Download Paper | Download Slides | Download Bibtex
Paper Title Number 2
Published in Journal 1, 2010
This paper is about the number 2. The number 3 is left for future work.
Recommended citation: Your Name, You. (2010). "Paper Title Number 2." Journal 1. 1(2).
Download Paper | Download Slides
Paper Title Number 3
Published in Journal 1, 2015
This paper is about the number 3. The number 4 is left for future work.
Recommended citation: Your Name, You. (2015). "Paper Title Number 3." Journal 1. 1(3).
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Paper Title Number 4
Published in GitHub Journal of Bugs, 2024
This paper is about fixing template issue #693.
Recommended citation: Your Name, You. (2024). "Paper Title Number 3." GitHub Journal of Bugs. 1(3).
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Paper Title Number 5, with math \(E=mc^2\)
Published in GitHub Journal of Bugs, 2024
This paper is about a famous math equation, \(E=mc^2\)
Recommended citation: Your Name, You. (2024). "Paper Title Number 3." GitHub Journal of Bugs. 1(3).
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talks
Talk 1 on Relevant Topic in Your Field
Published:
This is a description of your talk, which is a markdown file that can be all markdown-ified like any other post. Yay markdown!
Conference Proceeding talk 3 on Relevant Topic in Your Field
Published:
This is a description of your conference proceedings talk, note the different field in type. You can put anything in this field.
teaching
Scientific courses
Academic courses, University Grenoble Alpes, 2024
Scientific vulgarization
Talks and Workshops for the general public, University Grenoble Alpes, 2024
- April 2026: Connecting Webinar Expertise: Imaging Data - Future of integration and exploitation of neuroimaging data - AI4Health @DAISY vision - UGA,FR/Swansea University, UK Watch the recording here
Mentorship
Mentorship, University Grenoble Alpes, 2025
- 2025: Single Cell RNA sequencing of FSHD1 patients - Fatemeh Khodadadi, Biotechnology M1 student (M1BHE)